José Luis Costa | jcosta@ipatimup.pt | (+351) 220 408 808
Genomics core facility
About us
The Genomics Core Facility is a full service facility dedicated to provide investigators state of the art technological solutions in the field of genomics and high throughput analysis. We offer technical expertise and support with experimental design, protocol development, and data analysis guidance. Sequencing is included in the Quality System of Ipatimup Diagnostics, therefore accredited by IPAC norms ISO 15189 and ISO/IEC 17025.The laboratory is an Ion Torrent certified service provider.
Expertise
Sanger sequencing
Next-generation sequencing
Metagenome sequencing
Real-time PCR
Digital PCR
Main services
RNA and DNA sample quality control
Sanger Sequencing:
- Automated analysis of genotyping
- Sequencing products by capillary electrophoresis
Next Generation Sequencing:
- Genome sequencing (non-human)
- Exome sequencing
- Amplicon sequencing
- Whole transcriptome sequencing
- Targeted transcriptome sequencing
- Metagenome sequencing
Patrícia Oliveira | poliveira@ipatimup.pt | (+351) 225 570 785
Bioinformatics
About us
Ipatimup offers researchers help in the analysis and interpretation of bioinformatics data derived from Next Generation Sequencing experiments (NGS). The bioinformatics analysis services proposed by Ipatimup rely on open source algorithms and highly specialized customizable approaches. Ipatimup provides bioinformatics data analysis services in close proximity with its collaborators, aimed at maximizing the analysis output and an accurate interpretation of NGS data.
Expertise
DNAseq data analysis:
- Whole Genome, Exome, Targeted Re-Sequencing;
BisulfiteSeq data analysis
RNAseq data analysis:
- Whole Transcriptome and Small-RNA Sequencing
ATACseq data analysis
Main services
DNAseq data for variant calling, annotation and integration with data from clinical/biological databases
BisulfiteSeq data for methylation analysis
RNAseq for differential expression and pathway/gene ontology enrichment analyses
ATACseq for identification and annotation of regions of open/closed chromatin